- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x R31: (2S,4S,5S)-5-amino-N-(3-amino-2,2-dimethyl-3-oxopropyl)-4-hydroxy-6-{4-[2-(3-methoxypropoxy)phenyl]-3-oxopiperazin-1-yl}-2-(propan-2-yl)hexanamide(Non-covalent)
R31.2: 24 residues within 4Å:- Chain A: T.18, Q.19, Y.20, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, A.122, F.124, Q.135, I.137, Y.162, L.224, D.226, T.227, G.228, A.229, S.230, I.305
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:P.118, A:F.119, A:A.122, A:I.137, A:L.224, A:I.305, A:I.305
- Hydrogen bonds: A:Y.20, A:D.38, A:D.38, A:G.40, A:S.84, A:T.85
- Salt bridges: A:D.38
- pi-Stacking: A:F.124
- pi-Cation interactions: A:Y.83
R31.4: 27 residues within 4Å:- Chain B: T.18, Q.19, Y.20, V.36, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, Q.135, I.137, Y.162, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:Q.19, B:P.118, B:P.118, B:F.119, B:A.122, B:I.137, B:I.305, B:I.305, B:T.309
- Hydrogen bonds: B:Y.20, B:D.38, B:D.38, B:G.40, B:S.84, B:T.85
- Salt bridges: B:D.38
- pi-Stacking: B:F.124
- pi-Cation interactions: B:Y.83
R31.6: 24 residues within 4Å:- Chain C: T.18, Q.19, Y.20, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, A.122, F.124, Q.135, I.137, Y.162, L.224, D.226, T.227, G.228, A.229, S.230, I.305
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:P.118, C:F.119, C:A.122, C:I.137, C:L.224, C:I.305, C:I.305
- Hydrogen bonds: C:Y.20, C:D.38, C:D.38, C:G.40, C:S.84, C:T.85
- Salt bridges: C:D.38
- pi-Stacking: C:F.124
- pi-Cation interactions: C:Y.83
R31.8: 27 residues within 4Å:- Chain D: T.18, Q.19, Y.20, V.36, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, Q.135, I.137, Y.162, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309
17 PLIP interactions:17 interactions with chain D- Hydrophobic interactions: D:Q.19, D:P.118, D:P.118, D:F.119, D:A.122, D:I.137, D:I.305, D:I.305, D:T.309
- Hydrogen bonds: D:Y.20, D:D.38, D:D.38, D:G.40, D:S.84
- Salt bridges: D:D.38
- pi-Stacking: D:F.124
- pi-Cation interactions: D:Y.83
R31.10: 24 residues within 4Å:- Chain E: T.18, Q.19, Y.20, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, A.122, F.124, Q.135, I.137, Y.162, L.224, D.226, T.227, G.228, A.229, S.230, I.305
16 PLIP interactions:16 interactions with chain E- Hydrophobic interactions: E:P.118, E:F.119, E:A.122, E:I.137, E:L.224, E:I.305, E:I.305
- Hydrogen bonds: E:Y.20, E:D.38, E:D.38, E:G.40, E:S.84, E:T.85
- Salt bridges: E:D.38
- pi-Stacking: E:F.124
- pi-Cation interactions: E:Y.83
R31.12: 27 residues within 4Å:- Chain F: T.18, Q.19, Y.20, V.36, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, Q.135, I.137, Y.162, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309
17 PLIP interactions:17 interactions with chain F- Hydrophobic interactions: F:Q.19, F:P.118, F:P.118, F:F.119, F:A.122, F:I.137, F:I.305, F:I.305, F:T.309
- Hydrogen bonds: F:Y.20, F:D.38, F:D.38, F:G.40, F:S.84
- Salt bridges: F:D.38
- pi-Stacking: F:F.124
- pi-Cation interactions: F:Y.83
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, Y. et al., Design and optimization of novel (2S,4S,5S)-5-amino-6-(2,2-dimethyl-5-oxo-4-phenylpiperazin-1-yl)-4-hydroxy-2-isopropylhexanamides as renin inhibitors. Bioorg.Med.Chem.Lett. (2012)
- Release Date
- 2012-07-25
- Peptides
- Renin: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
SMTL ID : 3vsw.3 (4 other biounits)
Human renin in complex with compound 8
Renin
Toggle Identical (ABCDEF)Related Entries With Identical Sequence
1bbs.1 | 1bbs.2 | 1bbs.3 | 1bbs.4 | 1rne.1 | 2bks.1 | 2bks.2 | 2bkt.1 | 2bkt.2 | 2iko.1 | 2iku.1 | 2il2.1 | 2ren.1 | 2v0z.1 | 2v0z.2 | 2v10.1 | 2v10.2 | 2v11.1 | 2v11.2 | 2v12.1 | 2v12.2 | 2v13.1 | 2v16.1 | 3g72.1 | 3g72.2 | 3g72.3 | 3oot.1 | 3oot.2 | 3oqf.1 | 3oqf.2 more...less...3oqk.1 | 3oqk.2 | 3q3t.1 | 3q3t.2 | 3q4b.1 | 3q4b.2 | 3q5h.1 | 3q5h.2 | 3sfc.1 | 3sfc.2 | 3sfc.3 | 3sfc.4 | 3sfc.5 | 3vsw.1 | 3vsw.2 | 3vsw.4 | 3vsw.5 | 3vsx.1 | 3vsx.2 | 3vsx.3 | 3vuc.1 | 3vuc.2 | 3vuc.3 | 3vyd.1 | 3vyd.2 | 3vyd.3 | 3vye.1 | 3vye.2 | 3vye.3 | 3vyf.1 | 3vyf.2 | 3vyf.3 | 4gj5.1 | 4gj5.2 | 4gj6.1 | 4gj6.2 | 4gj7.1 | 4gj7.2 | 4gj8.1 | 4gj8.2 | 4gj9.1 | 4gj9.2 | 4gja.1 | 4gja.2 | 4gjb.1 | 4gjb.2 | 4gjc.1 | 4gjc.2 | 4gjd.1 | 4gjd.2 | 4pyv.1 | 4pyv.2 | 4q1n.1 | 4q1n.2 | 4q1n.3 | 4ryc.1 | 4ryc.2 | 4ryc.3 | 4ryg.1 | 4ryg.2 | 4ryg.3 | 4rz1.1 | 4rz1.2 | 4rz1.3 | 4s1g.1 | 4s1g.2 | 4s1g.3 | 4xx3.1 | 4xx3.2 | 4xx3.3 | 4xx3.4 | 4xx3.5 | 4xx4.1 | 4xx4.2 | 4xx4.3 | 4xx4.4 | 4xx4.5 | 5sy2.1 | 5sy2.2 | 5sy2.3 | 7xgk.1 | 7xgk.2 | 7xgo.1 | 7xgo.2 | 7xgp.1 | 7xgp.2