SMTL ID : 5sy2.2 (2 other biounits)

Structure-based design of a new series of N-piperidin-3-ylpyrimidine-5-carboxamides as renin inhibitors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.75, T.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.75

1 x 74V: N-ethyl-4-{[(furan-2-yl)methyl]amino}-2-methyl-N-[(3S)-piperidin-3-yl]pyrimidine-5-carboxamide(Non-covalent)

74V.2: 14 residues within 4Å: Chain A: T.18, Q.19, Y.20, V.36, D.38, G.40, L.121, F.124, Y.162, D.226, T.227, G.228, A.229, S.230 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.36, A:L.121 Hydrogen bonds: A:D.38, A:G.228 Water bridges: A:S.230, A:S.230

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 6 residues within 4Å: Chain A: L.195, I.196, K.197, R.330, N.331, N.332 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.198, A:N.332, A:N.332

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imaeda, Y. et al., Structure-based design of a new series of N-(piperidin-3-yl)pyrimidine-5-carboxamides as renin inhibitors. Bioorg.Med.Chem. (2016)

Release Date

2016-11-02

Peptides

Renin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Renin

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