- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 11 residues within 4Å:- Chain A: D.17, A.282, D.283, Y.284, V.285, F.286, A.299, T.318, R.321
- Chain B: S.169, Q.170
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.321
- Water bridges: A:Q.287
GOL.3: 12 residues within 4Å:- Chain A: T.18, Q.19, Y.20, V.36, F.124, Y.162, T.227, G.228, A.229, S.230, A.317
- Ligands: S53.5
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.20, A:Y.20, A:Y.162, A:A.229
- Water bridges: A:F.37
GOL.4: 3 residues within 4Å:- Chain A: K.50, G.76, F.91
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.50, A:G.76
GOL.8: 8 residues within 4Å:- Chain B: D.17, A.282, D.283, V.285, F.286, A.299, T.318, R.321
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.282, B:R.321
- Water bridges: B:R.164, B:Q.287, B:Q.287
GOL.11: 11 residues within 4Å:- Chain C: D.17, A.282, D.283, Y.284, V.285, F.286, A.299, T.318, R.321
- Chain D: S.169, Q.170
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.321
- Water bridges: C:Q.287
GOL.12: 12 residues within 4Å:- Chain C: T.18, Q.19, Y.20, V.36, F.124, Y.162, T.227, G.228, A.229, S.230, A.317
- Ligands: S53.14
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Y.20, C:Y.20, C:Y.162, C:A.229
- Water bridges: C:F.37
GOL.13: 3 residues within 4Å:- Chain C: K.50, G.76, F.91
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.50, C:G.76
GOL.17: 8 residues within 4Å:- Chain D: D.17, A.282, D.283, V.285, F.286, A.299, T.318, R.321
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:A.282, D:R.321
- Water bridges: D:R.164, D:Q.287, D:Q.287
GOL.20: 11 residues within 4Å:- Chain E: D.17, A.282, D.283, Y.284, V.285, F.286, A.299, T.318, R.321
- Chain F: S.169, Q.170
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:D.17, E:R.321
- Water bridges: E:Q.287
GOL.21: 12 residues within 4Å:- Chain E: T.18, Q.19, Y.20, V.36, F.124, Y.162, T.227, G.228, A.229, S.230, A.317
- Ligands: S53.23
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Y.20, E:Y.20, E:A.229
- Water bridges: E:F.37
GOL.22: 3 residues within 4Å:- Chain E: K.50, G.76, F.91
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:K.50, E:G.76
GOL.26: 8 residues within 4Å:- Chain F: D.17, A.282, D.283, V.285, F.286, A.299, T.318, R.321
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:A.282, F:R.321
- Water bridges: F:R.164, F:Q.287, F:Q.287
- 9 x S53: [7-benzyl-2-(5-fluoro-2-methylphenoxy)-1-phenyl-1H-pyrrolo[2,3-c]pyridin-3-yl](piperazin-1-yl)methanone(Non-covalent)
S53.5: 21 residues within 4Å:- Chain A: Q.19, V.36, D.38, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, D.226, G.228, A.229, S.230, H.301, M.303
- Chain C: Y.60
- Ligands: GOL.3, S53.6
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:Q.19, A:Y.83, A:Y.83, A:Y.83, A:T.85, A:P.118, A:P.118, A:F.119, A:L.121, A:A.122, A:V.127
- Hydrogen bonds: A:S.84, A:T.85, A:D.226
- Water bridges: A:Y.231
- pi-Stacking: A:F.124
S53.6: 11 residues within 4Å:- Chain A: L.117, L.121, R.251, L.252, F.253
- Chain C: Y.60, M.120, L.121
- Ligands: S53.5, S53.15, S53.24
9 PLIP interactions:8 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:L.117, A:L.117, A:L.121, A:L.121, A:L.252, A:F.253, A:F.253, C:L.121
- pi-Stacking: A:F.253
S53.9: 13 residues within 4Å:- Chain B: Q.19, V.36, D.38, Y.83, S.84, T.85, P.118, F.119, V.127, D.226, G.228, A.229, S.230
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:Q.19, B:Y.83, B:Y.83, B:T.85, B:T.85, B:P.118, B:F.119, B:V.127
- Hydrogen bonds: B:S.84, B:T.85, B:D.226
- Water bridges: B:S.230
S53.14: 21 residues within 4Å:- Chain C: Q.19, V.36, D.38, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, D.226, G.228, A.229, S.230, H.301, M.303
- Chain E: Y.60
- Ligands: GOL.12, S53.15
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:Q.19, C:Y.83, C:Y.83, C:Y.83, C:T.85, C:P.118, C:P.118, C:F.119, C:L.121, C:A.122, C:V.127
- Hydrogen bonds: C:S.84, C:T.85, C:D.226
- Water bridges: C:Y.231
- pi-Stacking: C:F.124
S53.15: 11 residues within 4Å:- Chain C: L.117, L.121, R.251, L.252, F.253
- Chain E: Y.60, M.120, L.121
- Ligands: S53.6, S53.14, S53.24
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain E- Hydrophobic interactions: C:L.117, C:L.117, C:L.121, C:L.121, C:L.252, C:F.253, C:F.253, E:L.121
- pi-Stacking: C:F.253
S53.18: 13 residues within 4Å:- Chain D: Q.19, V.36, D.38, Y.83, S.84, T.85, P.118, F.119, V.127, D.226, G.228, A.229, S.230
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:Q.19, D:Y.83, D:Y.83, D:T.85, D:T.85, D:P.118, D:F.119, D:V.127
- Hydrogen bonds: D:S.84, D:T.85, D:D.226
- Water bridges: D:S.230
S53.23: 21 residues within 4Å:- Chain A: Y.60
- Chain E: Q.19, V.36, D.38, Y.83, S.84, T.85, P.118, F.119, L.121, A.122, F.124, V.127, D.226, G.228, A.229, S.230, H.301, M.303
- Ligands: GOL.21, S53.24
16 PLIP interactions:16 interactions with chain E- Hydrophobic interactions: E:Q.19, E:Y.83, E:Y.83, E:Y.83, E:T.85, E:P.118, E:P.118, E:F.119, E:L.121, E:A.122, E:V.127
- Hydrogen bonds: E:S.84, E:T.85, E:D.226
- Water bridges: E:Y.231
- pi-Stacking: E:F.124
S53.24: 11 residues within 4Å:- Chain A: Y.60, M.120, L.121
- Chain E: L.117, L.121, R.251, L.252, F.253
- Ligands: S53.6, S53.15, S53.23
9 PLIP interactions:8 interactions with chain E, 1 interactions with chain A- Hydrophobic interactions: E:L.117, E:L.117, E:L.121, E:L.121, E:L.252, E:F.253, E:F.253, A:L.121
- pi-Stacking: E:F.253
S53.27: 13 residues within 4Å:- Chain F: Q.19, V.36, D.38, Y.83, S.84, T.85, P.118, F.119, V.127, D.226, G.228, A.229, S.230
12 PLIP interactions:12 interactions with chain F- Hydrophobic interactions: F:Q.19, F:Y.83, F:Y.83, F:T.85, F:T.85, F:P.118, F:F.119, F:V.127
- Hydrogen bonds: F:S.84, F:T.85, F:D.226
- Water bridges: F:S.230
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Scheiper, B. et al., Structure-based optimization of potent 4- and 6-azaindole-3-carboxamides as renin inhibitors. Bioorg.Med.Chem.Lett. (2011)
- Release Date
- 2011-08-31
- Peptides
- Renin: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
SMTL ID : 3sfc.4 (4 other biounits)
Structure-Based Optimization of Potent 4- and 6-Azaindole-3-Carboxamides as Renin Inhibitors
Renin
Toggle Identical (ABCDEF)Related Entries With Identical Sequence
1bbs.1 | 1bbs.2 | 1bbs.3 | 1bbs.4 | 1rne.1 | 2bks.1 | 2bks.2 | 2bkt.1 | 2bkt.2 | 2iko.1 | 2iku.1 | 2il2.1 | 2ren.1 | 2v0z.1 | 2v0z.2 | 2v10.1 | 2v10.2 | 2v11.1 | 2v11.2 | 2v12.1 | 2v12.2 | 2v13.1 | 2v16.1 | 3g72.1 | 3g72.2 | 3g72.3 | 3oot.1 | 3oot.2 | 3oqf.1 | 3oqf.2 more...less...3oqk.1 | 3oqk.2 | 3q3t.1 | 3q3t.2 | 3q4b.1 | 3q4b.2 | 3q5h.1 | 3q5h.2 | 3sfc.1 | 3sfc.2 | 3sfc.3 | 3sfc.5 | 3vsw.1 | 3vsw.2 | 3vsw.3 | 3vsw.4 | 3vsw.5 | 3vsx.1 | 3vsx.2 | 3vsx.3 | 3vuc.1 | 3vuc.2 | 3vuc.3 | 3vyd.1 | 3vyd.2 | 3vyd.3 | 3vye.1 | 3vye.2 | 3vye.3 | 3vyf.1 | 3vyf.2 | 3vyf.3 | 4gj5.1 | 4gj5.2 | 4gj6.1 | 4gj6.2 | 4gj7.1 | 4gj7.2 | 4gj8.1 | 4gj8.2 | 4gj9.1 | 4gj9.2 | 4gja.1 | 4gja.2 | 4gjb.1 | 4gjb.2 | 4gjc.1 | 4gjc.2 | 4gjd.1 | 4gjd.2 | 4pyv.1 | 4pyv.2 | 4q1n.1 | 4q1n.2 | 4q1n.3 | 4ryc.1 | 4ryc.2 | 4ryc.3 | 4ryg.1 | 4ryg.2 | 4ryg.3 | 4rz1.1 | 4rz1.2 | 4rz1.3 | 4s1g.1 | 4s1g.2 | 4s1g.3 | 4xx3.1 | 4xx3.2 | 4xx3.3 | 4xx3.4 | 4xx3.5 | 4xx4.1 | 4xx4.2 | 4xx4.3 | 4xx4.4 | 4xx4.5 | 5sy2.1 | 5sy2.2 | 5sy2.3 | 7xgk.1 | 7xgk.2 | 7xgo.1 | 7xgo.2 | 7xgp.1 | 7xgp.2