SMTL ID : 3rth.1

Structure of Bace-1 (Beta-Secretase) in Complex with 6-(2-(3,3-Dimethylbut-1-ynyl)phenyl)quinolin-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: I.121, T.122, E.123, S.124 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: D.125, K.126 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: R.115, E.153, Q.162 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x RTH: 6-[2-(3,3-dimethylbut-1-yn-1-yl)phenyl]quinolin-2-amine(Non-covalent)

RTH.5: 10 residues within 4Å: Chain A: D.51, G.53, V.88, Y.90, K.94, W.95, F.127, I.137, D.247, G.249 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.88, A:Y.90, A:F.127, A:I.137 Hydrogen bonds: A:D.51, A:G.53 pi-Stacking: A:Y.90, A:Y.90, A:F.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, Y. et al., From Fragment Screening to In Vivo Efficacy: Optimization of a Series of 2-Aminoquinolines as Potent Inhibitors of Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1). J.Med.Chem. (2011)

Release Date

2011-08-31

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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