SMTL ID : 5i3x.1

Crystal structure of BACE1 in complex with aminoquinoline inhibitor 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 68J: N-(1-{3-[2-(2-amino-3-{3-[(3,3-dimethylbutyl)amino]-3-oxopropyl}quinolin-6-yl)phenyl]prop-2-yn-1-yl}cyclopropyl)-4-fluorobenzamide(Non-covalent)

68J.1: 24 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, D.51, G.53, S.54, V.88, Y.90, K.94, W.95, K.126, F.127, I.129, W.134, I.137, R.147, Y.217, D.247, S.248, G.249, T.250, T.251 Ligands: GOL.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.49, A:V.88, A:Y.90, A:Y.90, A:Y.90, A:F.127, A:F.127, A:W.134, A:I.137 Hydrogen bonds: A:D.51, A:G.53, A:G.53, A:Y.217, A:G.249 pi-Stacking: A:Y.90, A:F.127

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: K.28, S.29, G.30, Q.31, G.32, Y.33, R.326, A.354, E.358 Ligands: 68J.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.28, A:G.30, A:Q.31, A:G.32, A:G.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jordan, J.B. et al., Fragment-Linking Approach Using (19)F NMR Spectroscopy To Obtain Highly Potent and Selective Inhibitors of beta-Secretase. J.Med.Chem. (2016)

Release Date

2016-03-30

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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