SMTL ID : 4di2.2 (2 other biounits)

Crystal structure of BACE1 in complex with hydroxyethylamine inhibitor 37

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 0K9: (2R)-N-{(2S,3R)-4-{[(4'S)-6'-(2,2-dimethylpropyl)-3',4'-dihydrospiro[cyclobutane-1,2'-pyrano[2,3-b]pyridin]-4'-yl]amino}-3-hydroxy-1-[3-(1,3-thiazol-2-yl)phenyl]butan-2-yl}-2-methoxypropanamide(Non-covalent)

0K9.1: 22 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, D.51, G.53, S.54, V.88, P.89, Y.90, T.91, F.127, I.129, I.145, Y.217, K.243, D.247, G.249, T.250, R.254, T.348, V.351 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.49, A:V.88, A:Y.90, A:T.91, A:F.127, A:I.145, A:V.351 Hydrogen bonds: A:G.53, A:G.53, A:T.91, A:G.249 Water bridges: A:Q.92

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: K.28, S.29, G.30, Q.31, G.32, Y.33, V.189, A.354, E.358 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.30, A:G.32 GOL.3: 2 residues within 4Å: Chain A: T.311, D.397 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.311, A:T.311, A:D.397 Water bridges: A:T.311, A:T.311, A:D.397

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dineen, T.A. et al., Design and synthesis of potent, orally efficacious hydroxyethylamine derived beta-site amyloid precursor protein cleaving enzyme (BACE1) inhibitors. J.Med.Chem. (2012)

Release Date

2012-10-10

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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