SMTL ID : 4frj.1

Crystal structure of BACE1 in complex with aminooxazoline xanthene 9l

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: H.64, E.123, S.124 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: K.126 Ligand excluded by PLIP

1 x DWB: (4S)-2'-(5-CHLORO-2-FLUOROPHENYL)-7'-METHOXYSPIRO[1,3-OXAZOLE-4,9'-XANTHEN]-2-AMINE(Non-covalent)

DWB.3: 20 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, D.51, G.53, S.54, V.88, Y.90, Q.92, F.127, I.129, W.134, I.137, R.147, D.247, S.248, G.249, T.250 Ligands: GOL.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.49, A:Y.90, A:F.127, A:I.129, A:W.134 Hydrogen bonds: A:D.51 pi-Stacking: A:Y.90 Halogen bonds: A:S.248

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 12 residues within 4Å: Chain A: K.28, S.29, G.30, Q.31, G.32, Y.33, V.189, T.250, T.251, R.326, A.354 Ligands: DWB.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.28, A:G.30, A:G.32, A:T.250, A:R.326 Water bridges: A:S.29, A:A.354

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 5 residues within 4Å: Chain A: R.115, N.117, E.153, S.158, Q.162 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H. et al., Structure- and Property-Based Design of Aminooxazoline Xanthenes as Selective, Orally Efficacious, and CNS Penetrable BACE Inhibitors for the Treatment of Alzheimer's Disease. J.Med.Chem. (2012)

Release Date

2012-09-12

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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