SMTL ID : 4b05.1

Preclinical characterization of AZD3839, a novel clinical candidate BACE1 inhibitor for the treatment of Alzheimer Disease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: G.53, S.54, I.145 Ligands: 32D.7 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.55, A:I.145 ACT.2: 2 residues within 4Å: Chain A: L.207, W.208 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.208 Water bridges: A:L.207, A:Y.209 ACT.3: 10 residues within 4Å: Chain A: G.60, A.61, A.62, P.63, H.64, L.67, I.121, T.122, S.124, F.128 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.62 Hydrogen bonds: A:A.61, A:A.62, A:A.62 Water bridges: A:S.124 Salt bridges: A:H.64 ACT.4: 3 residues within 4Å: Chain A: K.265, S.266, A.269 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.266 Salt bridges: A:K.265 ACT.5: 4 residues within 4Å: Chain A: L.103, T.113, V.114, R.115 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.103

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 2 residues within 4Å: Chain A: V.160, T.163 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.160

1 x 32D: (1S)-1-[2-(difluoromethyl)pyridin-4-yl]-4-fluoro-1-(3-pyrimidin-5-ylphenyl)-1H-isoindol-3-amine(Non-covalent)

32D.7: 20 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, D.51, G.53, S.54, N.56, A.58, Y.90, Q.92, W.95, F.127, I.129, W.134, I.137, D.247, G.249, T.250 Ligands: ACT.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.90, A:F.127, A:F.127, A:W.134, A:I.137 Hydrogen bonds: A:D.51 Water bridges: A:T.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeppsson, F. et al., Discovery of AZD3839, a potent and selective BACE1 inhibitor clinical candidate for the treatment of Alzheimer disease. J. Biol. Chem. (2012)

Release Date

2012-10-17

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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