SMTL ID : 5i3w.1

Crystal structure of BACE1 in complex with 2-aminooxazoline-3-azaxanthene inhibitor 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: T.122, E.123, S.124 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: H.64, K.126 Ligand excluded by PLIP IOD.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: R.69, Y.70, Q.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.70, A:Y.70

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: D.365, R.368, R.370 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.370, A:R.370 Salt bridges: A:R.368, A:R.370

1 x 68L: N-[(5S)-2'-amino-3-(5,6-dihydro-2H-pyran-3-yl)-5'H-spiro[1-benzopyrano[2,3-c]pyridine-5,4'-[1,3]oxazol]-7-yl]-5-chloropyridine-2-carboxamide(Non-covalent)

68L.6: 24 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, D.51, G.53, S.54, V.88, Y.90, Q.92, W.95, F.127, I.129, W.134, I.137, I.145, R.147, Y.217, D.247, S.248, G.249, T.250, T.251, A.354 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.49, A:F.127, A:I.137 Hydrogen bonds: A:R.147, A:D.247, A:G.249, A:T.250 Water bridges: A:Q.92 pi-Stacking: A:Y.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jordan, J.B. et al., Fragment-Linking Approach Using (19)F NMR Spectroscopy To Obtain Highly Potent and Selective Inhibitors of beta-Secretase. J.Med.Chem. (2016)

Release Date

2016-03-30

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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