SMTL ID : 6wny.1

Crystal structure of BACE1 in complex with (Z)-fluoro-olefin containing compound 15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x U64: 6-[(Z)-2-{3-[(1S,5S,6S)-3-amino-5-methyl-1-(morpholine-4-carbonyl)-2-thia-4-azabicyclo[4.1.0]hept-3-en-5-yl]-4-fluorophenyl}-1-fluoroethenyl]pyridine-3-carbonitrile(Non-covalent)

U64.1: 22 residues within 4Å: Chain A: G.30, Q.31, G.32, Y.33, L.49, D.51, G.53, S.54, Y.90, F.127, I.129, W.134, I.137, I.145, R.147, Y.217, D.247, S.248, G.249, T.250, T.251, A.354 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.49, A:Y.90, A:Y.90, A:Y.90, A:F.127 Hydrogen bonds: A:D.51, A:R.147, A:Y.217, A:T.250 Water bridges: A:Q.31, A:Y.33, A:Y.33, A:T.91, A:R.147

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 4 residues within 4Å: Chain A: H.64, F.66, D.125, K.126 Ligand excluded by PLIP IOD.3: 5 residues within 4Å: Chain A: H.64, I.121, E.123, S.124, F.128 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: Y.241, K.258 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frohn, M. et al., The development of a structurally distinct series of BACE1 inhibitors via the (Z)-fluoro-olefin amide bioisosteric replacement. Bioorg.Med.Chem.Lett. (2020)

Release Date

2020-06-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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