SMTL ID : 3vbh.1 (4 other biounits)

Crystal structure of formaldehyde treated human enterovirus 71 (space group R32)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 14 residues within 4Å: Chain A: I.111, D.112, I.113, F.135, F.137, F.155, V.179, V.192, M.195, W.203, N.228, M.230, F.233, A.275 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.111, A:F.135, A:F.137, A:F.155, A:F.155, A:V.179, A:V.192, A:W.203, A:N.228, A:F.233, A:F.233 Hydrogen bonds: A:D.112, A:I.113 Water bridges: A:N.228

2 x K: POTASSIUM ION(Non-covalent)

K.2: 4 residues within 4Å: Chain A: T.28, G.29, N.31, N.71 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:T.28, A:G.29, A:N.71 K.4: 3 residues within 4Å: Chain A: Q.189 Chain C: V.20, S.21 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 7 residues within 4Å: Chain A: V.44, P.45, L.47, Q.48 Chain D: E.52, A.54, P.56 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.44, A:Q.48

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain C: D.89, P.90, G.91, W.111, H.180, A.181 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., A sensor-adaptor mechanism for enterovirus uncoating from structures of EV71. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-02-29

Peptides

Genome Polyprotein, capsid protein VP1: A
Genome polyprotein, capsid protein VP2: B
Genome Polyprotein, vapsid protein VP3: C
Genome Polyprotein, capsid protein VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Genome Polyprotein, capsid protein VP1

Genome polyprotein, capsid protein VP2

Genome Polyprotein, vapsid protein VP3

Genome Polyprotein, capsid protein VP4

Related Entries With Identical Sequence