SMTL ID : 4cdq.4 (3 other biounits)

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor GPP2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 7VR: 4-((5-(2-oxo-3-(pyridin-4-yl)imidazolidin-1-yl)pentyl)oxy)benzaldehyde O-ethyl oxime(Non-covalent)

7VR.1: 19 residues within 4Å: Chain A: I.111, D.112, I.113, T.114, F.135, F.137, Y.153, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, Q.202, W.203, N.228, F.233 Chain C: I.24 13 PLIP interactions: 1 interactions with chain C, 12 interactions with chain A Hydrophobic interactions: C:I.24, A:I.111, A:I.111, A:T.114, A:F.155, A:F.155, A:V.179, A:V.192, A:W.203, A:W.203, A:N.228 Hydrogen bonds: A:I.113 pi-Stacking: A:F.135

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain C: E.5 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Colibus, L. et al., More-Powerful Virus Inhibitors from Structure-Based Analysis of Hev71 Capsid-Binding Molecules. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-02-12

Peptides

VP1: A
VP2: B
VP3: C
VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

VP1

VP2

VP3

VP4

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