SMTL ID : 4cdu.4 (3 other biounits)

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor GPP3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x YM2: 1-[(3S)-5-[4-[(E)-ETHOXYIMINOMETHYL]PHENOXY]-3-METHYL-PENTYL]-3-PYRIDIN-4-YL-IMIDAZOLIDIN-2-ONE(Non-covalent)

YM2.1: 20 residues within 4Å: Chain A: I.111, D.112, I.113, T.114, F.135, F.137, Y.153, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, F.233 Chain C: I.24 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.111, A:I.111, A:T.114, A:F.135, A:F.155, A:V.179, A:V.192, A:W.203, A:W.203, A:N.228, C:I.24 Hydrogen bonds: A:I.113 pi-Stacking: A:F.135, A:F.155

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain B: G.90 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain C: G.1 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.1, C:G.1 NA.4: 4 residues within 4Å: Chain C: P.23, P.26 Chain D: K.34, D.35 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.35, D:D.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Colibus, L. et al., More-Powerful Virus Inhibitors from Structure-Based Analysis of Hev71 Capsid-Binding Molecules. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-02-12

Peptides

VP1: A
VP2: B
VP3: C
VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

VP1

VP2

VP3

VP4

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