SMTL ID : 4cew.3 (3 other biounits)

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor ALD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x 7J5: 4-[3-[(3s)-5-[4-[(e)-ethoxyiminomethyl]phenoxy]-3-methyl-pentyl]-2-oxidanylidene-imidazolidin-1-yl]pyridine-2-carboxamide(Non-covalent)

7J5.1: 22 residues within 4Å: Chain A: I.111, D.112, I.113, T.114, F.131, F.135, F.137, Y.153, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, K.274, A.275 Chain C: I.24 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.111, A:I.111, A:T.114, A:F.131, A:F.155, A:F.155, A:V.179, A:V.192, A:W.203, A:N.228, C:I.24 Hydrogen bonds: A:D.112, A:I.113, A:T.114 pi-Stacking: A:F.135 7J5.2: 22 residues within 4Å: Chain E: I.111, D.112, I.113, T.114, F.131, F.135, F.137, Y.153, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, K.274, A.275 Chain G: I.24 15 PLIP interactions: 14 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.111, E:I.111, E:T.114, E:F.131, E:F.155, E:F.155, E:V.179, E:V.192, E:W.203, E:N.228, G:I.24 Hydrogen bonds: E:D.112, E:I.113, E:T.114 pi-Stacking: E:F.135 7J5.3: 22 residues within 4Å: Chain I: I.111, D.112, I.113, T.114, F.131, F.135, F.137, Y.153, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, K.274, A.275 Chain K: I.24 14 PLIP interactions: 13 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.111, I:I.111, I:T.114, I:F.131, I:F.155, I:F.155, I:V.179, I:V.192, I:W.203, I:N.228, K:I.24 Hydrogen bonds: I:D.112, I:I.113 pi-Stacking: I:F.135 7J5.4: 22 residues within 4Å: Chain M: I.111, D.112, I.113, T.114, F.131, F.135, F.137, Y.153, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, K.274, A.275 Chain O: I.24 14 PLIP interactions: 13 interactions with chain M, 1 interactions with chain O Hydrophobic interactions: M:I.111, M:I.111, M:T.114, M:F.131, M:F.155, M:F.155, M:V.179, M:V.192, M:W.203, M:N.228, O:I.24 Hydrogen bonds: M:D.112, M:I.113 pi-Stacking: M:F.135 7J5.5: 22 residues within 4Å: Chain Q: I.111, D.112, I.113, T.114, F.131, F.135, F.137, Y.153, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, K.274, A.275 Chain S: I.24 14 PLIP interactions: 1 interactions with chain S, 13 interactions with chain Q Hydrophobic interactions: S:I.24, Q:I.111, Q:I.111, Q:T.114, Q:F.131, Q:F.155, Q:F.155, Q:V.179, Q:V.192, Q:W.203, Q:N.228 Hydrogen bonds: Q:D.112, Q:I.113 pi-Stacking: Q:F.135 7J5.6: 22 residues within 4Å: Chain U: I.111, D.112, I.113, T.114, F.131, F.135, F.137, Y.153, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, Q.202, W.203, N.228, M.230, K.274, A.275 Chain W: I.24 14 PLIP interactions: 13 interactions with chain U, 1 interactions with chain W Hydrophobic interactions: U:I.111, U:I.111, U:T.114, U:F.131, U:F.155, U:F.155, U:V.179, U:V.192, U:W.203, U:N.228, W:I.24 Hydrogen bonds: U:D.112, U:I.113 pi-Stacking: U:F.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Colibus, L. et al., More-Powerful Virus Inhibitors from Structure-Based Analysis of Hev71 Capsid-Binding Molecules. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-02-12

Peptides

VP1: AEIMQU
VP2: BFJNRV
VP3: CGKOSW
VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

VP1

VP2

VP3

VP4

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