SMTL ID : 4cdw.4 (3 other biounits)

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor GPP4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x VR2: 1-[(3S)-5-(4-iodanylphenoxy)-3-methyl-pentyl]-3-pyridin-4-yl-imidazolidin-2-one(Non-covalent)

VR2.1: 14 residues within 4Å: Chain A: I.111, D.112, I.113, T.114, F.135, F.155, V.192, M.195, Y.201, Q.202, W.203, N.228, M.253 Chain C: I.24 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.111, A:T.114, A:F.135, A:F.155, A:F.155, A:V.192, A:W.203, A:W.203, A:N.228, C:I.24 Hydrogen bonds: A:I.113 pi-Stacking: A:F.135

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain C: E.5 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.5 NA.3: 3 residues within 4Å: Chain A: Q.189 Chain C: S.21, A.22 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.21, C:A.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Colibus, L. et al., More-Powerful Virus Inhibitors from Structure-Based Analysis of Hev71 Capsid-Binding Molecules. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-02-12

Peptides

VP1: A
VP2: B
VP3: C
VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

VP1

VP2

VP3

VP4

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