SMTL ID : 4cey.4 (3 other biounits)

Crystal structure of human Enterovirus 71 in complex with the uncoating inhibitor NLD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 906: 1-(2-aminopyridin-4-yl)-3-[(3S)-5-{4-[(E)-(ethoxyimino)methyl]phenoxy}-3-methylpentyl]imidazolidin-2-one(Non-covalent)

906.1: 19 residues within 4Å: Chain A: I.111, D.112, I.113, T.114, F.131, F.135, F.137, Y.153, F.155, P.177, S.178, V.179, V.192, M.195, Y.201, Q.202, W.203, N.228, K.274 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.111, A:I.111, A:T.114, A:F.131, A:F.135, A:V.179, A:V.192, A:W.203, A:W.203, A:N.228 Hydrogen bonds: A:D.112, A:I.113, A:T.114 pi-Stacking: A:F.135, A:F.155

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: Q.189 Chain C: V.20, S.21 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.21 NA.3: 1 residues within 4Å: Chain C: Y.188 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Colibus, L. et al., More-Powerful Virus Inhibitors from Structure-Based Analysis of Hev71 Capsid-Binding Molecules. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-02-12

Peptides

VP1: A
VP2: B
VP3: C
VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

VP1

VP2

VP3

VP4

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