SMTL ID : 8ytj.3 (3 other biounits)

Cryo-EM structure of enterovirus A71 mature virion

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x SPH: SPHINGOSINE

SPH.1: 14 residues within 4Å: Chain A: I.111, D.112, I.113, F.135, F.137, Y.153, F.155, V.179, V.192, M.195, W.203, N.228, M.230, F.233 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.111, A:F.135, A:F.135, A:F.137, A:F.155, A:F.155, A:V.179, A:V.192, A:M.230 Hydrogen bonds: A:I.111, A:I.113 SPH.2: 14 residues within 4Å: Chain E: I.111, D.112, I.113, F.135, F.137, Y.153, F.155, V.179, V.192, M.195, W.203, N.228, M.230, F.233 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:I.111, E:F.135, E:F.135, E:F.137, E:F.155, E:F.155, E:V.179, E:V.192, E:M.230 Hydrogen bonds: E:I.111, E:I.113 SPH.3: 14 residues within 4Å: Chain I: I.111, D.112, I.113, F.135, F.137, Y.153, F.155, V.179, V.192, M.195, W.203, N.228, M.230, F.233 11 PLIP interactions: 11 interactions with chain I Hydrophobic interactions: I:I.111, I:F.135, I:F.135, I:F.137, I:F.155, I:F.155, I:V.179, I:V.192, I:M.230 Hydrogen bonds: I:I.111, I:I.113 SPH.4: 14 residues within 4Å: Chain M: I.111, D.112, I.113, F.135, F.137, Y.153, F.155, V.179, V.192, M.195, W.203, N.228, M.230, F.233 11 PLIP interactions: 11 interactions with chain M Hydrophobic interactions: M:I.111, M:F.135, M:F.135, M:F.137, M:F.155, M:F.155, M:V.179, M:V.192, M:M.230 Hydrogen bonds: M:I.111, M:I.113 SPH.5: 14 residues within 4Å: Chain Q: I.111, D.112, I.113, F.135, F.137, Y.153, F.155, V.179, V.192, M.195, W.203, N.228, M.230, F.233 11 PLIP interactions: 11 interactions with chain Q Hydrophobic interactions: Q:I.111, Q:F.135, Q:F.135, Q:F.137, Q:F.155, Q:F.155, Q:V.179, Q:V.192, Q:M.230 Hydrogen bonds: Q:I.111, Q:I.113 SPH.6: 14 residues within 4Å: Chain U: I.111, D.112, I.113, F.135, F.137, Y.153, F.155, V.179, V.192, M.195, W.203, N.228, M.230, F.233 11 PLIP interactions: 11 interactions with chain U Hydrophobic interactions: U:I.111, U:F.135, U:F.135, U:F.137, U:F.155, U:F.155, U:V.179, U:V.192, U:M.230 Hydrogen bonds: U:I.111, U:I.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y. et al., Cryo-EM structure of enterovirus A71 mature virion in complex with Fab h1A6.2. To Be Published

Release Date

2024-09-04

Peptides

Capsid protein VP1: AEIMQU
Capsid protein VP2: BFJNRV
Capsid protein VP3: CGKOSW
Capsid protein VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

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