SMTL ID : 3wsp.2 (1 other biounit)

Crystal Structure of P450BM3 with N-perfluorononanoyl-L-tryptophan

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: K.70, L.76, L.87, F.88, W.97, F.108, I.154, F.262, A.265, T.269, T.270, L.273, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: DMS.3 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:L.87, A:F.88, A:F.88, A:F.108, A:I.154, A:F.262, A:A.265, A:L.273, A:A.329, A:F.394, A:I.402 Hydrogen bonds: A:R.399 Water bridges: A:K.70, A:K.70, A:S.333, A:S.333, A:S.333 Salt bridges: A:K.70, A:R.399 Metal complexes: A:C.401

1 x W09: N-(2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,9-heptadecafluorononanoyl)-L-tryptophan(Non-covalent)

W09.2: 22 residues within 4Å: Chain A: L.21, P.26, V.27, L.30, F.43, A.45, R.48, T.50, Y.52, S.73, Q.74, A.75, L.76, F.88, M.186, L.189, A.329, P.330, A.331, M.355, L.438, T.439 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.21, A:A.45, A:R.48, A:T.50 Hydrogen bonds: A:Y.52, A:Q.74, A:A.75 pi-Stacking: A:F.43 Halogen bonds: A:A.331, A:L.438

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: F.88, A.265, T.269, A.329 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cong, Z. et al., Activation of Wild-type Cytochrome P450BM3 by the Next Generation of Decoy Molecules: Enhanced Hydroxylation of Gaseous Alkanes and Crystallographic Evidence. ACS CATALYSIS (2015)

Release Date

2014-11-26

Peptides

Bifunctional P-450/NADPH-P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional P-450/NADPH-P450 reductase

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