SMTL ID : 7czi.1 (1 other biounit)

Structure of the CYP102A1 Haem Domain with N-{2-[4-(Trifluoromethoxy)phenoxy]}acetoyl-L-Phenylalanine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: K.70, L.76, L.87, F.88, W.97, I.154, F.262, A.265, T.269, T.270, L.273, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: DMS.3 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:L.87, A:F.88, A:F.88, A:F.88, A:I.154, A:F.262, A:A.265, A:L.273, A:A.329, A:F.394, A:I.402 Hydrogen bonds: A:R.399 Water bridges: A:K.70, A:K.70, A:S.333, A:S.333, A:S.333 Salt bridges: A:K.70, A:R.399 Metal complexes: A:C.401

1 x G56: (2S)-3-phenyl-2-[2-[4-(trifluoromethyloxy)phenoxy]ethanoylamino]propanoic acid(Non-covalent)

G56.2: 20 residues within 4Å: Chain A: L.21, V.27, L.30, F.43, A.45, R.48, Y.52, S.73, Q.74, A.75, L.76, F.88, M.186, L.189, A.329, P.330, A.331, M.355, L.438 Ligands: DMS.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.21, A:F.43, A:A.45, A:R.48, A:A.75, A:L.76 Hydrogen bonds: A:Y.52, A:Q.74, A:A.75 Salt bridges: A:R.48 pi-Cation interactions: A:R.48 Halogen bonds: A:L.438

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: F.88, A.265, T.269 Ligands: HEM.1, G56.2 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.88

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: T.147, R.148, L.151, S.165, P.171, I.175, H.267 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.148 GOL.5: 4 residues within 4Å: Chain A: N.320, F.380, P.383, F.391 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.320 Water bridges: A:N.320 GOL.6: 2 residues within 4Å: Chain A: D.122, R.162 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.122, A:R.162, A:R.162 Water bridges: A:R.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shoji, O. et al., Structure of the CYP102A1 Haem Domain with N-{2-[4-(Trifluoromethoxy)phenoxy]}acetoyl-L-Phenylalanine at 1.64 Angstrom Resolution. To Be Published

Release Date

2021-09-08

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional cytochrome P450/NADPH--P450 reductase

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