SMTL ID : 7cvr.1 (1 other biounit)

Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with (S)-1-Tetralylamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: K.70, L.87, F.88, W.97, I.154, F.262, A.265, T.269, T.270, L.273, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: ZP6.2, STQ.3 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:L.87, A:F.88, A:F.88, A:I.154, A:F.262, A:A.265, A:L.273, A:A.329, A:F.394, A:I.402 Hydrogen bonds: A:R.399 Water bridges: A:K.70, A:K.70, A:H.101, A:S.333, A:S.333, A:S.333 Salt bridges: A:K.70, A:R.399 Metal complexes: A:C.401

1 x ZP6: (2S)-3-phenyl-2-[[(2S)-1-phenylmethoxycarbonylpyrrolidin-2-yl]carbonylamino]propanoic acid(Non-covalent)

ZP6.2: 19 residues within 4Å: Chain A: L.21, P.26, V.27, L.30, F.43, A.45, R.48, Y.52, S.73, Q.74, A.75, L.76, F.88, M.186, L.189, A.331, M.355, L.438 Ligands: HEM.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.21, A:P.26, A:V.27, A:F.43, A:A.45, A:L.76, A:L.438 Hydrogen bonds: A:S.73, A:Q.74, A:A.75 Salt bridges: A:R.48 pi-Stacking: A:F.88 pi-Cation interactions: A:R.48

1 x STQ: (1~{S})-1,2,3,4-tetrahydronaphthalen-1-amine(Non-covalent)

STQ.3: 9 residues within 4Å: Chain A: F.88, T.261, I.264, A.265, T.269, A.329, L.438, T.439 Ligands: HEM.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.88, A:F.88, A:F.88, A:T.261, A:I.264, A:A.265, A:T.269, A:A.329, A:L.438, A:T.439 pi-Stacking: A:F.88

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: L.151, P.171, H.172, I.175, H.267 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.165, A:S.165, A:H.172 Water bridges: A:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shoji, O. et al., Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with (S)-1-Tetralylamine at 1.60 Angstrom Resolution. To Be Published

Release Date

2021-09-01

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional cytochrome P450/NADPH--P450 reductase

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