SMTL ID : 7wy1.1 (1 other biounit)

Structure of the Oxomolybdenum Mesoporphyrin IX-Reconstituted CYP102A1 Haem Domain with N-Enanthyl-L-Prolyl-L-Phenylalanine in complex with Styerene

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MI9: Oxomolybdenum Mesoporphyrin IX(Non-covalent)

MI9.1: 27 residues within 4Å: Chain A: K.70, L.76, L.87, F.88, W.97, F.108, F.262, A.265, G.266, T.269, T.270, L.273, L.323, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, F.406, A.407 Ligands: SYN.3 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.87, A:F.88, A:F.88, A:F.88, A:F.108, A:F.262, A:F.262, A:A.265, A:L.273, A:L.323, A:F.394, A:I.402, A:F.406, A:A.407 Water bridges: A:K.70, A:K.70, A:S.333, A:S.333, A:S.333 Salt bridges: A:K.70, A:R.399

1 x D0L: (2S)-2-[[(2S)-1-heptylpyrrolidin-2-yl]carbonylamino]-3-phenyl-propanoic acid(Non-covalent)

D0L.2: 16 residues within 4Å: Chain A: L.21, P.26, V.27, L.30, F.43, A.45, R.48, T.50, Y.52, S.73, Q.74, A.75, F.88, L.189, A.331 Ligands: SYN.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.21, A:P.26, A:V.27, A:F.43, A:F.43, A:A.45, A:T.50, A:A.75, A:F.88, A:L.189 Hydrogen bonds: A:Y.52, A:Q.74, A:A.75 Salt bridges: A:R.48 pi-Cation interactions: A:R.48

1 x SYN: ethenylbenzene(Non-covalent)

SYN.3: 7 residues within 4Å: Chain A: V.79, F.88, I.264, A.265, T.439 Ligands: MI9.1, D0L.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.79, A:F.88, A:F.88, A:I.264, A:A.265, A:T.439

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, K. et al., A Compound I Mimic Reveals the Transient Active Species of a Cytochrome P450 Enzyme: Insight into the Stereoselectivity of P450-Catalysed Oxidations. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-01-04

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional cytochrome P450/NADPH--P450 reductase

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