SMTL ID : 7coo.2 (1 other biounit)

Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with Cyclohexylamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: K.70, L.76, L.87, F.88, W.97, F.108, I.154, F.262, A.265, T.269, T.270, L.273, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: HAI.2, ZP6.3 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:L.87, A:F.88, A:F.88, A:F.108, A:I.154, A:F.262, A:A.265, A:L.273, A:A.329, A:F.394, A:I.402 Hydrogen bonds: A:R.399 Water bridges: A:K.70, A:K.70, A:H.101, A:S.333, A:S.333, A:S.333 Salt bridges: A:K.70, A:R.399 Metal complexes: A:C.401

1 x HAI: CYCLOHEXYLAMMONIUM ION(Non-covalent)

HAI.2: 9 residues within 4Å: Chain A: F.88, I.264, A.265, T.269, A.329, L.438, T.439 Ligands: HEM.1, ZP6.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.88, A:F.88, A:F.88, A:I.264, A:T.269, A:A.329, A:L.438, A:T.439

1 x ZP6: (2S)-3-phenyl-2-[[(2S)-1-phenylmethoxycarbonylpyrrolidin-2-yl]carbonylamino]propanoic acid(Non-covalent)

ZP6.3: 20 residues within 4Å: Chain A: L.21, V.27, L.30, F.43, A.45, R.48, Y.52, S.73, Q.74, A.75, L.76, F.88, M.186, L.189, A.329, A.331, M.355, L.438 Ligands: HEM.1, HAI.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.21, A:V.27, A:F.43, A:A.45, A:R.48, A:L.76, A:A.329, A:L.438 Hydrogen bonds: A:S.73, A:Q.74, A:A.75 Salt bridges: A:R.48 pi-Stacking: A:F.88 pi-Cation interactions: A:R.48

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 1 residues within 4Å: Chain A: K.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.10 GOL.5: 5 residues within 4Å: Chain A: D.69, T.92, H.93, Y.335, K.337 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.69, A:K.337 Water bridges: A:D.69, A:Y.335, A:Y.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shoji, O. et al., Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with Cyclohexylamine at 1.49 Angstrom Resolution. To Be Published

Release Date

2021-09-15

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional cytochrome P450/NADPH--P450 reductase

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