SMTL ID : 6jo1.1 (1 other biounit)

Structure of the CYP102A1 Haem Domain with N-(S)-Ibuprofenoyl-L-Phenylalanine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: K.70, L.76, L.87, F.88, W.97, F.108, I.154, F.262, A.265, T.269, T.270, L.273, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: DMS.3 24 PLIP interactions: 24 interactions with chain A, Hydrophobic interactions: A:L.87, A:F.88, A:F.88, A:F.108, A:I.154, A:F.262, A:A.265, A:T.269, A:L.273, A:A.329, A:F.394, A:I.402, A:A.407 Hydrogen bonds: A:R.399 Water bridges: A:K.70, A:K.70, A:S.333, A:S.333, A:S.333, A:Q.398, A:Q.398 Salt bridges: A:K.70, A:R.399 Metal complexes: A:C.401

1 x BWX: (2S)-2-[[(2S)-2-[4-(2-methylpropyl)phenyl]propanoyl]amino]-3-phenyl-propanoic acid(Non-covalent)

BWX.2: 18 residues within 4Å: Chain A: L.21, V.27, L.30, F.43, A.45, R.48, T.50, Y.52, S.73, Q.74, A.75, F.88, M.186, L.189, A.329, P.330, A.331, L.438 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.21, A:V.27, A:F.43, A:A.45, A:T.50, A:A.75, A:F.88, A:L.438, A:L.438 Hydrogen bonds: A:Y.52, A:Q.74, A:A.75 Salt bridges: A:R.48 pi-Cation interactions: A:R.48

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: F.88, A.265, T.269, A.329 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.88

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: E.132, R.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.133, A:R.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stanfield, J.K. et al., Crystals in Minutes: Instant On-Site Microcrystallisation of Various Flavours of the CYP102A1 (P450BM3) Haem Domain. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-03-18

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional cytochrome P450/NADPH--P450 reductase

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