SMTL ID : 7e46.1 (1 other biounit)

Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with (S)-(-)-1-Phenylethylamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: K.70, L.76, L.87, F.88, W.97, F.108, I.154, A.265, T.269, T.270, L.273, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: 98B.3 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:L.87, A:F.88, A:F.88, A:F.108, A:I.154, A:A.265, A:T.269, A:L.273, A:A.329, A:F.394, A:I.402, A:A.407 Hydrogen bonds: A:R.399 Water bridges: A:K.70, A:H.101, A:S.333, A:S.333, A:R.399 Salt bridges: A:K.70, A:R.399 Metal complexes: A:C.401

1 x ZP6: (2S)-3-phenyl-2-[[(2S)-1-phenylmethoxycarbonylpyrrolidin-2-yl]carbonylamino]propanoic acid(Non-covalent)

ZP6.2: 19 residues within 4Å: Chain A: L.21, P.26, V.27, L.30, F.43, A.45, R.48, Y.52, S.73, Q.74, A.75, F.88, L.189, A.329, P.330, A.331, M.355, L.438 Ligands: 98B.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.21, A:P.26, A:V.27, A:F.43, A:A.45, A:R.48, A:F.88, A:A.329, A:L.438 Hydrogen bonds: A:S.73, A:Q.74, A:A.75 Salt bridges: A:R.48 pi-Cation interactions: A:R.48

1 x 98B: (1S)-1-phenylethanamine(Non-covalent)

98B.3: 8 residues within 4Å: Chain A: F.88, T.261, I.264, A.265, A.329, L.438 Ligands: HEM.1, ZP6.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.88, A:F.88, A:T.261, A:I.264, A:A.265, A:A.329, A:L.438 pi-Stacking: A:F.88

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: D.69, H.93, K.337 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.335, A:K.337 Water bridges: A:D.69, A:D.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shoji, O. et al., Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with (S)-(-)-1-Phenylethylamine at 1.91 Angstrom Resolution. To Be Published

Release Date

2022-02-16

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional cytochrome P450/NADPH--P450 reductase

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