SMTL ID : 4b7e.1

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH CONSENSUS ANKYRIN REPEAT DOMAIN-LEU PEPTIDE (20-MER)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.199, D.201, H.279 Ligands: OGA.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.199, A:D.201, A:H.279 ZN.12: 4 residues within 4Å: Chain C: H.199, D.201, H.279 Ligands: OGA.13 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.199, C:D.201, C:H.279

2 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 14 residues within 4Å: Chain A: Y.145, L.188, T.196, H.199, D.201, N.205, F.207, K.214, H.279, I.281, N.294, W.296 Chain B: L.14 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.145, A:T.196, A:N.205, A:N.294 Salt bridges: A:K.214, A:H.279 OGA.13: 14 residues within 4Å: Chain C: Y.145, L.188, T.196, H.199, D.201, N.205, F.207, K.214, H.279, I.281, N.294, W.296 Chain D: L.14 Ligands: ZN.12 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Y.145, C:T.196, C:T.196, C:N.205, C:N.294 Salt bridges: C:K.214, C:H.279

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.33, T.97, H.98, R.143 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.33, A:T.97, A:H.98 Salt bridges: A:H.98, A:R.143 SO4.4: 7 residues within 4Å: Chain A: K.99, L.101, Y.230, S.240, Q.241, V.242, D.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.230, A:Q.241 Water bridges: A:F.244 SO4.5: 4 residues within 4Å: Chain A: R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.141, A:E.142 Salt bridges: A:R.138 SO4.6: 6 residues within 4Å: Chain A: R.33, R.143, E.192, G.193, L.285, N.286 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.33, A:E.192, A:E.192, A:N.286 Salt bridges: A:R.143 SO4.7: 4 residues within 4Å: Chain A: P.221, K.311, A.312, H.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.312, A:H.313 SO4.14: 4 residues within 4Å: Chain C: R.33, T.97, H.98, R.143 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.33, C:H.98 Salt bridges: C:H.98, C:R.143 SO4.15: 7 residues within 4Å: Chain C: K.99, L.101, Y.230, S.240, Q.241, V.242, D.243 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.241 Water bridges: C:D.243, C:F.244 SO4.16: 4 residues within 4Å: Chain C: R.138, G.140, E.141, E.142 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.141, C:E.142 Salt bridges: C:R.138 SO4.17: 6 residues within 4Å: Chain C: R.33, R.143, E.192, G.193, L.285, N.286 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.33, C:E.192, C:N.286 Salt bridges: C:R.143 SO4.18: 4 residues within 4Å: Chain C: P.221, K.311, A.312, H.313 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.312, C:H.313

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 2 residues within 4Å: Chain A: W.167, N.171 No protein-ligand interaction detected (PLIP) GOL.9: 7 residues within 4Å: Chain A: S.91, Y.93, Q.147, Q.148, T.149 Chain B: A.15, Q.16 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.93, A:Y.93, A:Q.148, A:T.149, B:Q.16, B:Q.16 GOL.10: 7 residues within 4Å: Chain A: D.222, F.224, E.225, A.312, K.315, M.319 Chain C: T.342 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.224, A:E.225, A:E.225, A:A.312 GOL.11: 1 residues within 4Å: Chain A: R.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.120, A:R.120 GOL.19: 2 residues within 4Å: Chain C: W.167, N.171 No protein-ligand interaction detected (PLIP) GOL.20: 7 residues within 4Å: Chain C: S.91, Y.93, Q.147, Q.148, T.149 Chain D: A.15, Q.16 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:Q.16, D:Q.16, C:Y.93, C:Q.148, C:T.149, C:T.149 GOL.21: 7 residues within 4Å: Chain A: T.342 Chain C: D.222, F.224, E.225, A.312, K.315, M.319 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:F.224, C:E.225, C:E.225, C:A.312 GOL.22: 1 residues within 4Å: Chain C: R.120 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.120, C:R.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, M. et al., Substrate selectivity analyses of factor inhibiting hypoxia-inducible factor. Angew. Chem. Int. Ed. Engl. (2013)

Release Date

2013-01-23

Peptides

HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR: AC
CONSENSUS ANKYRIN REPEAT DOMAIN-LEU: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR

CONSENSUS ANKYRIN REPEAT DOMAIN-LEU

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