SMTL ID : 4d0n.1

AKAP13 (AKAP-Lbc) RhoGEF domain in complex with RhoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: D.14, G.15, A.16, C.17, G.18, K.19, T.20, C.21, A.62, K.119, D.121, L.122, S.161, A.162, K.163 Ligands: SO4.5 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:D.14, A:A.16, A:C.17, A:G.18, A:K.19, A:T.20, A:T.20, A:C.21, A:E.65, A:K.119, A:K.119, A:S.161, A:A.162, A:K.163, A:K.163 Salt bridges: A:K.19, A:D.121

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.69 Chain B: S.225 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.69 SO4.4: 4 residues within 4Å: Chain B: Q.86, R.90, N.118, N.124 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.86, B:N.118, B:N.124 Water bridges: B:F.87 Salt bridges: B:R.90 SO4.5: 4 residues within 4Å: Chain B: K.29, R.194, Q.197 Ligands: GDP.1 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.197 Salt bridges: B:K.29, B:R.194 SO4.6: 2 residues within 4Å: Chain B: K.24, K.25 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.25 SO4.7: 4 residues within 4Å: Chain A: V.44 Chain B: V.169, R.170, R.171 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.170, B:R.171 Salt bridges: B:R.170, B:R.171

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: K.8, L.73, P.76 Chain B: H.139, L.179 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abdul Azeez, K.R. et al., The Crystal Structure of the Rhoa : Akap-Lbc Dh-Ph Domain Complex. Biochem.J. (2014)

Release Date

2014-05-21

Peptides

TRANSFORMING PROTEIN RHOA: A
A-KINASE ANCHOR PROTEIN 13: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TRANSFORMING PROTEIN RHOA

A-KINASE ANCHOR PROTEIN 13

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