SMTL ID : 7g9e.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with PCM-0102197-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.8: 3 residues within 4Å: Chain B: Q.100, A.101, L.102 No protein-ligand interaction detected (PLIP) DMS.9: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.204 Water bridges: B:H.203, B:I.205 DMS.10: 4 residues within 4Å: Chain B: A.154, D.156, K.157, Q.160 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.160 DMS.11: 3 residues within 4Å: Chain B: L.23, H.26, K.28 No protein-ligand interaction detected (PLIP)

10 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 2 residues within 4Å: Chain A: R.146, N.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.146 Water bridges: A:D.147, A:N.150 FMT.3: 2 residues within 4Å: Chain A: V.36, P.37 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.197 FMT.4: 4 residues within 4Å: Chain A: Y.43, V.44 Chain B: K.173, R.174 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.174, A:V.44 FMT.5: 3 residues within 4Å: Chain A: R.71, K.99, W.100 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.14, A:R.71 FMT.6: 3 residues within 4Å: Chain A: P.72, P.76 Chain B: Q.232 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.232 Water bridges: B:S.143 FMT.12: 3 residues within 4Å: Chain B: H.113, R.114, I.205 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.114 FMT.13: 3 residues within 4Å: Chain B: S.196, L.216, K.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.196, B:K.220 FMT.14: 3 residues within 4Å: Chain B: C.79, E.82, T.134 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.82 FMT.15: 1 residues within 4Å: Chain B: T.214 No protein-ligand interaction detected (PLIP) FMT.16: 3 residues within 4Å: Chain B: K.144, L.233, E.234 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.234 Water bridges: B:E.234, B:A.237

1 x ZG6: N-(3-methyl-1,2-oxazol-5-yl)acetamide(Covalent)

ZG6.7: 5 residues within 4Å: Chain B: E.129, C.132, K.133, S.136, N.225 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:K.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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