SMTL ID : 7g9d.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with PCM-0102179-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

hetero-1-1-mer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.8: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.204 Water bridges: B:H.203

9 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 1 residues within 4Å: Chain A: R.146 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146, A:N.150 FMT.3: 3 residues within 4Å: Chain A: C.21, P.37, T.38 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.38 Water bridges: A:C.21 FMT.4: 4 residues within 4Å: Chain A: Y.43, V.44 Chain B: K.173, R.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.44 FMT.5: 5 residues within 4Å: Chain A: E.65, R.71, K.99, W.100, E.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.99 FMT.6: 2 residues within 4Å: Chain A: P.72 Chain B: S.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.143, B:S.143 FMT.9: 5 residues within 4Å: Chain B: R.97, V.111, I.112, H.113, R.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.113, B:R.114 FMT.10: 1 residues within 4Å: Chain B: G.105 No protein-ligand interaction detected (PLIP) FMT.11: 3 residues within 4Å: Chain B: P.192, S.196, K.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.196, B:K.220 FMT.12: 1 residues within 4Å: Chain B: E.82 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.82

1 x T7Y: N-[3-(2-oxopyrrolidin-1-yl)phenyl]acetamide(Covalent)

T7Y.7: 5 residues within 4Å: Chain B: S.21, F.22, C.103, S.106, N.109 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.22, B:F.22 Hydrogen bonds: B:N.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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