SMTL ID : 7g8m.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with Z1255459547

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Z0I: N-(1H-indol-7-yl)acetamide(Non-covalent)

Z0I.1: 8 residues within 4Å: Chain A: K.105, N.110, V.111, P.112, I.113, G.153, A.154, F.155 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.113, A:F.155 Hydrogen bonds: A:I.113, A:G.153, A:F.155

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.7: 3 residues within 4Å: Chain B: Q.100, A.101, L.102 No protein-ligand interaction detected (PLIP) DMS.8: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.203, B:G.204 Water bridges: B:I.205

12 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain A: R.146, N.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.146 Water bridges: A:R.146, A:N.150 FMT.4: 3 residues within 4Å: Chain A: Y.43, V.44 Chain B: R.174 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.174, A:Y.43, A:V.44 FMT.5: 4 residues within 4Å: Chain A: E.65, R.71, K.99, W.100 No protein-ligand interaction detected (PLIP) FMT.6: 4 residues within 4Å: Chain A: P.72, P.76, F.107 Chain B: S.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.143, B:S.143 FMT.9: 3 residues within 4Å: Chain B: H.113, R.114, I.205 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.114 Water bridges: B:H.113, B:H.113 FMT.10: 5 residues within 4Å: Chain B: R.97, V.111, I.112, H.113, R.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.113, B:R.114 FMT.11: 1 residues within 4Å: Chain B: R.197 2 PLIP interactions: 2 interactions with chain A Water bridges: A:P.37, A:T.38 FMT.12: 3 residues within 4Å: Chain B: P.192, S.196, K.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.196, B:K.220 FMT.13: 4 residues within 4Å: Chain B: E.82, K.133, T.134, E.137 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.82 FMT.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FMT.15: 3 residues within 4Å: Chain B: K.144, L.233, E.234 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.234 Water bridges: B:E.234 FMT.16: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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