SMTL ID : 7g9g.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with PCM-0102236-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

hetero-1-1-mer

Ligands

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.10: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.203, B:G.204 DMS.11: 2 residues within 4Å: Chain B: H.26, K.28 No protein-ligand interaction detected (PLIP)

11 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 2 residues within 4Å: Chain A: R.146, N.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146, A:N.150 FMT.3: 3 residues within 4Å: Chain A: P.37, T.38 Chain B: R.197 1 PLIP interactions: 1 interactions with chain A Water bridges: A:C.21 FMT.4: 3 residues within 4Å: Chain A: Y.43, V.44 Chain B: R.174 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.174, A:Y.43, A:V.44 FMT.5: 4 residues within 4Å: Chain A: T.78, D.79, N.110, V.111 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.110 FMT.6: 4 residues within 4Å: Chain A: E.65, R.71, K.99, W.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.103 Water bridges: A:D.14 FMT.7: 1 residues within 4Å: Chain A: H.106 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.106 FMT.8: 3 residues within 4Å: Chain A: P.72, F.107 Chain B: S.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.143, B:S.143 FMT.12: 5 residues within 4Å: Chain B: R.97, V.111, I.112, H.113, R.114 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.111, B:H.113, B:R.114 FMT.13: 4 residues within 4Å: Chain B: P.192, S.196, L.216, K.220 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.220 FMT.14: 3 residues within 4Å: Chain B: C.79, E.82, T.134 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.82 FMT.15: 1 residues within 4Å: Chain B: T.214 No protein-ligand interaction detected (PLIP)

1 x ZGK: N-(2-methoxyphenyl)acetamide(Covalent)

ZGK.9: 8 residues within 4Å: Chain B: D.19, S.21, F.22, Q.25, C.103, P.104, S.106, N.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.25, B:S.106, B:N.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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