SMTL ID : 8bnt.1

The DH domain of ARHGEF2 bound to RhoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.8: 3 residues within 4Å: Chain B: Q.100, A.101, L.102 No protein-ligand interaction detected (PLIP) DMS.9: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.204 Water bridges: B:H.203, B:I.205 DMS.10: 5 residues within 4Å: Chain B: Y.153, A.154, D.156, K.157, Q.160 No protein-ligand interaction detected (PLIP) DMS.11: 3 residues within 4Å: Chain B: L.23, H.26, K.28 No protein-ligand interaction detected (PLIP)

15 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 2 residues within 4Å: Chain A: R.146, N.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.146 Water bridges: A:R.146, A:N.150 FMT.3: 3 residues within 4Å: Chain A: V.36, P.37 Chain B: R.197 1 PLIP interactions: 1 interactions with chain A Water bridges: A:P.37 FMT.4: 2 residues within 4Å: Chain A: P.109, N.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.110 FMT.5: 3 residues within 4Å: Chain A: K.99, W.100, E.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.103 Water bridges: A:D.14 FMT.6: 3 residues within 4Å: Chain A: H.106, F.107, P.109 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.107 FMT.7: 5 residues within 4Å: Chain A: P.72, L.73, Y.75, P.76, F.107 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.143 FMT.12: 3 residues within 4Å: Chain B: H.113, R.114, I.205 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.114 Water bridges: B:H.113 FMT.13: 4 residues within 4Å: Chain B: R.97, I.112, H.113, R.114 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.97, B:V.111, B:H.113, B:R.114 FMT.14: 4 residues within 4Å: Chain A: Y.43, V.44 Chain B: K.173, R.174 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.44, B:R.174 FMT.15: 2 residues within 4Å: Chain B: P.104, G.105 1 PLIP interactions: 1 interactions with chain B Water bridges: B:P.104 FMT.16: 3 residues within 4Å: Chain B: P.192, S.196, K.220 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.192, B:S.196, B:K.220 FMT.17: 6 residues within 4Å: Chain B: Y.231, Q.232, L.233, E.234, A.237, I.242 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.231, B:E.234 FMT.18: 4 residues within 4Å: Chain B: C.79, E.82, K.133, T.134 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.82, B:Q.130 FMT.19: 2 residues within 4Å: Chain B: E.96, Q.100 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.96, B:Q.100 FMT.20: 4 residues within 4Å: Chain B: I.120, S.124, T.214, L.218 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., The DH domain of ARHGEF2 bound to RhoA. To Be Published

Release Date

2022-12-07

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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