SMTL ID : 7g8d.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with Z104474228

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-mer

Ligands

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.2: 5 residues within 4Å: Chain A: K.8, W.59, P.76 Chain B: Q.178, L.182 No protein-ligand interaction detected (PLIP) DMS.11: 3 residues within 4Å: Chain B: Q.100, A.101, L.102 No protein-ligand interaction detected (PLIP) DMS.12: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.203, B:G.204 Water bridges: B:I.205 DMS.13: 4 residues within 4Å: Chain B: L.23, H.26, K.28, M.31 No protein-ligand interaction detected (PLIP)

12 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 1 residues within 4Å: Chain A: R.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.146 FMT.4: 3 residues within 4Å: Chain A: V.36, P.37 Chain B: R.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.36 FMT.5: 3 residues within 4Å: Chain A: Y.43, V.44 Chain B: R.174 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.43, A:V.44, B:R.174 FMT.6: 4 residues within 4Å: Chain A: R.71, K.99, W.100, E.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.103 Water bridges: A:D.14 FMT.7: 2 residues within 4Å: Chain A: H.106, F.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.106 FMT.14: 3 residues within 4Å: Chain B: H.113, R.114, I.205 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.114 Water bridges: B:H.113, B:H.113 FMT.15: 5 residues within 4Å: Chain B: R.97, V.111, I.112, H.113, R.114 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.97, B:H.113, B:R.114 FMT.16: 3 residues within 4Å: Chain B: P.192, S.196, K.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.196, B:K.220 FMT.17: 5 residues within 4Å: Chain B: C.79, E.82, K.133, T.134, E.137 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.82, B:K.133 Water bridges: B:E.137 FMT.18: 3 residues within 4Å: Chain B: I.120, S.124, T.214 No protein-ligand interaction detected (PLIP) FMT.19: 3 residues within 4Å: Chain B: K.144, L.233, E.234 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.234 Water bridges: B:E.234 FMT.20: 1 residues within 4Å: Chain B: H.113 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.113

3 x 60P: 3-methylthiophene-2-carboxylic acid(Non-covalent)(Non-functional Binders)

60P.8: 6 residues within 4Å: Chain A: P.72, Y.75, P.76, F.107 Chain B: S.143, K.147 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.75, A:P.76, A:F.107 Hydrogen bonds: B:S.143 Salt bridges: B:K.147 60P.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) 60P.10: 2 residues within 4Å: Chain B: K.150, Y.153 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.150, B:K.150, B:Y.153 Salt bridges: B:K.150 Hydrogen bonds: A:D.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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