SMTL ID : 7g8i.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with Z1198316457

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

hetero-1-1-mer

Ligands

1 x YXY: 4,4-difluorocyclohexane-1-carboxamide(Non-covalent)

YXY.1: 8 residues within 4Å: Chain A: K.28, F.31, P.32, E.33, V.34, Y.35 Chain B: D.12, L.16 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.34, B:L.16 Hydrogen bonds: A:V.34, A:Y.35, B:D.12

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.8: 4 residues within 4Å: Chain B: Q.100, A.101, L.102, C.103 No protein-ligand interaction detected (PLIP) DMS.9: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.203, B:G.204

11 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain A: R.146, N.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146, A:N.150 FMT.4: 3 residues within 4Å: Chain A: V.36, P.37 Chain B: R.197 1 PLIP interactions: 1 interactions with chain A Water bridges: A:C.21 FMT.5: 4 residues within 4Å: Chain A: Y.43, V.44 Chain B: K.173, R.174 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.43, A:V.44, B:R.174 FMT.6: 5 residues within 4Å: Chain A: E.65, R.71, K.99, W.100, E.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.99 FMT.7: 3 residues within 4Å: Chain A: P.72, F.107 Chain B: Q.232 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.232 FMT.10: 6 residues within 4Å: Chain B: R.97, A.101, V.111, I.112, H.113, R.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.113, B:R.114 FMT.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FMT.12: 3 residues within 4Å: Chain B: P.192, S.196, K.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.220 Water bridges: B:S.196 FMT.13: 3 residues within 4Å: Chain B: C.79, E.82, T.134 No protein-ligand interaction detected (PLIP) FMT.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FMT.15: 1 residues within 4Å: Chain B: I.205 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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