SMTL ID : 4g1y.1

Structural basis for the accommodation of bis- and tris-aromatic derivatives in Vitamin D Nuclear Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 0VO: (4E,6Z)-7-(3-{[3,4-bis(hydroxymethyl)benzyl]oxy}phenyl)-3-ethylnona-4,6-dien-3-ol(Non-covalent)

0VO.1: 21 residues within 4Å: Chain A: Y.22, Y.26, A.106, L.108, V.109, S.112, I.143, M.147, R.149, S.150, S.153, W.161, C.163, V.175, A.178, H.180, L.188, H.270, Y.274, L.277, V.291 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.108, A:L.108, A:V.109, A:V.109, A:I.143, A:V.175, A:V.175, A:L.188, A:L.277, A:V.291 Hydrogen bonds: A:Y.22, A:R.149, A:R.149, A:S.153, A:H.270 pi-Stacking: A:W.161 0VO.2: 21 residues within 4Å: Chain C: Y.22, Y.26, A.106, L.108, V.109, S.112, I.143, M.147, R.149, S.150, S.153, W.161, C.163, V.175, A.178, H.180, L.188, H.270, Y.274, L.277, V.291 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:L.108, C:L.108, C:V.109, C:V.109, C:I.143, C:V.175, C:V.175, C:L.188, C:L.277, C:V.291 Hydrogen bonds: C:Y.22, C:Y.22, C:R.149, C:R.149, C:S.153, C:H.270 pi-Stacking: C:W.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ciesielski, F. et al., Structural basis for the accommodation of bis- and tris-aromatic derivatives in vitamin d nuclear receptor. J.Med.Chem. (2012)

Release Date

2012-09-26

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 1

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