SMTL ID : 4gmc.2 (1 other biounit)

Crystal structure of HCV NS5B polymerase in complex with a thumb inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x 1BI: 3-cyclohexyl-2-(furan-3-yl)-1-[2-(morpholin-4-yl)-2-oxoethyl]-N-(phenylsulfonyl)-1H-indole-6-carboxamide(Non-covalent)

1BI.1: 15 residues within 4Å: Chain A: V.37, L.392, A.393, A.395, A.396, I.424, L.425, H.428, F.429, L.492, G.493, V.494, P.495, W.500, R.503 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.395, A:A.396, A:A.396, A:I.424, A:L.425, A:F.429, A:V.494, A:W.500 Hydrogen bonds: A:R.503, A:R.503

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.48, K.51, R.158, T.221, R.222, C.223 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.223 Salt bridges: A:R.48, A:K.51, A:R.158 SO4.3: 7 residues within 4Å: Chain A: F.193, T.287, S.288, N.291, G.317, D.318, S.556 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.291, A:D.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beaulieu, P.L. et al., Allosteric N-acetamide-indole-6-carboxylic acid thumb pocket 1 inhibitors of hepatitis C virus NS5B polymerase - Acylsulfonamides and acylsulfamides as carboxylic acid replacements. Can.J.Chem. (2013)

Release Date

2013-02-20

Peptides

NS5B polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NS5B polymerase

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