SMTL ID : 4jvq.1 (1 other biounit)

Crystal structure of hcv ns5b polymerase in complex with compound 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: S.96, A.97, F.162, R.168, G.283, G.557, D.559 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.96, A:A.97, A:G.557, A:D.559 Water bridges: A:D.559

1 x 1ML: 5-{4-[(4-methoxybenzoyl)amino]phenoxy}-2-{[(trans-4-methylcyclohexyl)carbonyl](propan-2-yl)amino}benzoic acid(Non-covalent)

1ML.2: 14 residues within 4Å: Chain A: L.419, R.422, M.423, L.474, H.475, S.476, Y.477, I.482, L.489, R.490, V.494, P.496, L.497, W.528 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:R.422, A:M.423, A:Y.477, A:I.482, A:I.482, A:L.489, A:P.496, A:L.497, A:L.497, A:W.528, A:W.528 Hydrogen bonds: A:S.476, A:Y.477, A:L.497 Water bridges: A:R.490

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: Q.194, Q.199, F.551 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Q.194, H2O.10, H2O.14 MG.4: 3 residues within 4Å: Chain A: D.220, T.221, D.318 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.220, A:T.221, H2O.2, H2O.5, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laplante, S.R. et al., Enantiomeric Atropisomers Inhibit HCV Polymerase and/or HIV Matrix: Characterizing Hindered Bond Rotations and Target Selectivity. J.Med.Chem. (2014)

Release Date

2014-02-05

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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