SMTL ID : 4jju.1 (1 other biounit)

Crystal structure of HCV NS5B polymerase in complex with COMPOUND 29

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: S.96, A.97, F.162, D.559 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.97 Water bridges: A:S.282, A:G.283, A:G.557, A:G.557, A:D.559

1 x 1MB: 1-(2,4-difluorobenzyl)-6-{[3-(trifluoromethyl)pyridin-2-yl]oxy}quinazolin-4(1H)-one(Non-covalent)

1MB.2: 13 residues within 4Å: Chain A: L.419, R.422, M.423, L.474, H.475, S.476, Y.477, I.482, V.485, A.486, L.489, L.497, W.528 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.419, A:M.423, A:I.482, A:L.497, A:W.528, A:W.528 Hydrogen bonds: A:S.476, A:Y.477 Halogen bonds: A:L.474

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: Q.194, F.551 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:Q.194, A:F.551 MG.4: 2 residues within 4Å: Chain A: D.220, T.221 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.220, A:T.221, H2O.5, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beaulieu, P.L. et al., Structure-based design of novel HCV NS5B thumb pocket 2 allosteric inhibitors with submicromolar gt1 replicon potency: Discovery of a quinazolinone chemotype. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-06-12

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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