SMTL ID : 4jtz.1 (1 other biounit)

Crystal structure of hcv ns5b polymerase in complex with compound 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: S.96, A.97, F.162, R.168, D.559 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.96, A:A.97 Water bridges: A:G.557, A:G.557, A:D.559

1 x 1NW: 3-{[4-oxo-1-(2,4,6-trifluorobenzyl)-1,4-dihydroquinazolin-6-yl]oxy}-N-(pyridin-3-yl)-2-(trifluoromethyl)benzamide(Non-covalent)

1NW.2: 14 residues within 4Å: Chain A: L.419, R.422, M.423, L.474, H.475, S.476, Y.477, I.482, V.485, A.486, R.490, P.496, L.497, W.528 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.419, A:I.482, A:P.496, A:L.497, A:L.497, A:L.497, A:W.528, A:W.528 Hydrogen bonds: A:S.476, A:Y.477, A:L.497

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: Q.194, F.551 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Q.194, A:F.551, H2O.7 MG.4: 3 residues within 4Å: Chain A: D.220, T.221, C.223 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.220, A:T.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hucke, O. et al., Molecular Dynamics Simulations and Structure-Based Rational Design Lead to Allosteric HCV NS5B Polymerase Thumb Pocket 2 Inhibitor with Picomolar Cellular Replicon Potency. J.Med.Chem. (2014)

Release Date

2013-07-03

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

Related Entries With Identical Sequence