SMTL ID : 4j02.1 (1 other biounit)

Crystal structure of hcv ns5b polymerase in complex with [(1R)-5,8-DICHLORO-1-PROPYL-1,3,4,9-TETRAHYDROPYRANO[3,4-B]INDOL-1-YL]ACETIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 1JE: [(1R)-5,8-DICHLORO-1-PROPYL-1,3,4,9-TETRAHYDROPYRANO[3,4-B]INDOL-1-YL]ACETIC ACID(Non-covalent)

1JE.1: 11 residues within 4Å: Chain A: L.419, R.422, M.423, H.475, S.476, Y.477, I.482, L.497, R.498, R.501, W.528 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.419, A:R.422, A:L.497, A:L.497, A:W.528, A:W.528 Hydrogen bonds: A:S.476 Water bridges: A:Y.477, A:Y.477, A:K.533

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.48, R.158, C.223 4 PLIP interactions: 4 interactions with chain A Water bridges: A:C.223, A:F.224 Salt bridges: A:R.48, A:R.158

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: D.220, T.221 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.221, A:T.221 Water bridges: A:C.223, A:F.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stammers, T.A. et al., Discovery of a novel series of non-nucleoside thumb pocket 2 HCV NS5B polymerase inhibitors. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-04-17

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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