SMTL ID : 4ju2.1 (1 other biounit)

Crystal structure of hcv ns5b polymerase in complex with compound 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: S.96, A.97, F.162, R.168, G.283, G.557 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.96, A:A.97, A:G.557 Water bridges: A:G.557

1 x 1O0: 6-[3-(pyridin-2-yl)-2-(trifluoromethyl)phenoxy]-1-(2,4,6-trifluorobenzyl)quinazolin-4(1H)-one(Non-covalent)

1O0.2: 16 residues within 4Å: Chain A: L.419, R.422, M.423, L.474, H.475, S.476, Y.477, I.482, V.485, A.486, L.489, V.494, P.495, P.496, L.497, W.528 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.419, A:M.423, A:I.482, A:L.489, A:L.489, A:L.497, A:W.528, A:W.528 Hydrogen bonds: A:S.476, A:Y.477 Water bridges: A:L.497 Halogen bonds: A:L.474

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: Q.194, F.551 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Q.194, A:F.551, H2O.1, H2O.5 MG.4: 5 residues within 4Å: Chain A: D.220, T.221, C.223, F.224, D.318 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.221, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hucke, O. et al., Molecular Dynamics Simulations and Structure-Based Rational Design Lead to Allosteric HCV NS5B Polymerase Thumb Pocket 2 Inhibitor with Picomolar Cellular Replicon Potency. J.Med.Chem. (2014)

Release Date

2013-07-03

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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