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SMTL ID : 4j8x.3 (2 other biounits)

X-ray structure of NCP145 with bound chlorido(eta-6-p-cymene)(N-fluorophenyl-2-pyridinecarbothioamide)ruthenium(II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:	7 residues within 4Å: Chain C: G.44, A.45, G.46, A.47 Chain D: T.90, S.91, R.92 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:G.46, C:A.47, D:T.90, D:S.91, D:R.92
SO4.4:	7 residues within 4Å: Chain G: G.44, A.45, G.46, A.47 Chain H: T.90, S.91 Chain I: A.110 5 PLIP interactions: 2 interactions with chain G, 3 interactions with chain H Hydrogen bonds: G:G.46, G:A.47, H:T.90, H:S.91, H:R.92
SO4.5:	4 residues within 4Å: Chain H: H.49, P.50, D.51, T.52 7 PLIP interactions: 7 interactions with chain H Hydrogen bonds: H:D.51, H:D.51, H:D.51, H:T.52, H:T.52, H:T.52 Salt bridges: H:H.49

2 x RU7: PARA-CYMENE RUTHENIUM CHLORIDE(Non-covalent)

RU7.2:	4 residues within 4Å: Chain D: H.82 Chain G: Y.39 Chain H: F.70, E.71 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain D Hydrophobic interactions: H:F.70 Metal complexes: D:H.82
RU7.6:	5 residues within 4Å: Chain C: K.36, G.37, Y.39 Chain D: E.71 Chain H: H.82 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain D Metal complexes: H:H.82 Hydrophobic interactions: D:E.71

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3:

1 residues within 4Å:

Chain E: D.77

1 PLIP interactions:

1 interactions with chain E

Metal complexes: E:D.77

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Meier, S.M. et al., Novel metal(II) arene 2-pyridinecarbothioamides: a rationale to orally active organometallic anticancer agents. CHEM SCI (2013)

Release Date

2013-05-08

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

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NGLPV2D

Histone H3.2

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Histone H4

Histone H2A

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Histone H2B 1.1

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