SMTL ID : 8yv8.1

Cryo-EM structure of CDCA7 bound to nucleosome including hemimethylated CpG site in Widom601 positioning sequence.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain K: C.7, C.10, C.34, C.37 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.7, K:C.10, K:C.34, K:C.37 ZN.2: 6 residues within 4Å: Chain K: C.21, C.26, R.30, G.31, C.57, C.60 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.21, K:C.26, K:C.57, K:C.60 ZN.3: 4 residues within 4Å: Chain K: H.8, C.64, C.66, C.69 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.8, K:C.64, K:C.66, K:C.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wassing, I. et al., CDCA7 is a hemimethylated DNA adaptor for the nucleosome remodeler HELLS. To Be Published

Release Date

2024-07-31

Peptides

Histone H3.1: AE
Histone H4: BF
Histone H2A type 1-B/E: CG
Histone H2B type 1-K: DH
Cell division cycle-associated protein 7: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
K

Histone H3.1

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-K

Cell division cycle-associated protein 7

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