SMTL ID : 4md4.1

Immune Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: V.116, N.118, E.166, H.167, W.168 Chain B: D.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.4

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: R.76, S.77, N.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.76, A:N.78 NAG.6: 2 residues within 4Å: Chain B: N.21, E.24 No protein-ligand interaction detected (PLIP)

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: F.108, D.110, K.111, R.140, R.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.111, A:R.140, A:R.146 EDO.4: 3 residues within 4Å: Chain A: R.123, N.124, K.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.124, A:K.126 EDO.5: 3 residues within 4Å: Chain A: V.97, E.98 Chain B: Y.104 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.98 Water bridges: A:V.97, A:D.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scally, S.W. et al., A molecular basis for the association of the HLA-DRB1 locus, citrullination, and rheumatoid arthritis. J.Exp.Med. (2013)

Release Date

2013-12-04

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
HLA class II histocompatibility antigen, DRB1-4 beta chain: B
Aggrecan core protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HLA class II histocompatibility antigen, DR alpha chain

HLA class II histocompatibility antigen, DRB1-4 beta chain

Aggrecan core protein

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