SMTL ID : 4zse.2 (1 other biounit)

Crystal structure of EGFR 696-1022 T790M/V948R, crystal form II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 21 residues within 4Å: Chain A: L.27, G.28, S.29, G.30, A.31, F.32, G.33, V.35, A.52, K.54, M.99, Q.100, L.101, M.102, C.106, D.146, R.150, N.151, L.153, D.164 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:A.31, A:Q.100, A:M.102, A:C.106, A:D.146, A:D.146, A:R.150, A:N.151 Water bridges: A:K.54, A:K.54, A:K.54, A:K.54, A:Q.100, A:R.150 Salt bridges: A:K.54 ANP.3: 20 residues within 4Å: Chain B: L.27, G.28, S.29, G.30, A.31, G.33, V.35, A.52, K.54, M.99, Q.100, L.101, M.102, C.106, D.146, R.150, N.151, L.153, D.164 Ligands: MG.4 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:A.31, B:Q.100, B:M.102, B:C.106, B:D.146, B:R.150, B:N.151 Water bridges: B:K.54, B:K.54, B:D.109, B:R.150, B:R.150, B:T.163 Salt bridges: B:K.54

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.151, D.164 Ligands: ANP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.164, H2O.2 MG.4: 3 residues within 4Å: Chain B: N.151, D.164 Ligands: ANP.3 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.164, H2O.13

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain B: Y.110, N.117, I.118, Y.122, H.297 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.110, B:H.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H. et al., Ibrutinib Selectively and Irreversibly Targets EGFR-mutant non-Small Cell Lung Cancer Cells. To Be Published

Release Date

2016-06-15

Peptides

Epidermal growth factor receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Epidermal growth factor receptor

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