SMTL ID : 7jxp.2 (2 other biounits)

EGFR kinase (T790M/V948R) in complex with osimertinib and JBJ-04-125-02

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-dimer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 22 residues within 4Å: Chain A: L.27, G.28, S.29, G.30, A.31, G.33, V.35, A.52, K.54, M.99, Q.100, L.101, M.102, C.106, D.109, D.146, R.150, N.151, L.153, D.164 Ligands: MG.2, JBJ.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:A.31, A:Q.100, A:M.102, A:C.106, A:D.146, A:D.146, A:R.150, A:N.151 Water bridges: A:K.54, A:K.54 Salt bridges: A:K.54

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.151, D.164 Ligands: ANP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.164, H2O.2, H2O.2

2 x JBJ: (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide(Non-covalent)

JBJ.3: 22 residues within 4Å: Chain A: F.32, V.35, A.52, I.53, K.54, L.56, E.58, I.68, M.75, C.84, R.85, L.86, L.97, M.99, D.164, F.165, L.167, L.170, L.171, E.174, Y.178 Ligands: ANP.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.32, A:L.56, A:I.68, A:I.68, A:M.75, A:L.97, A:F.165, A:L.167, A:L.170 Hydrogen bonds: A:K.54, A:E.58, A:D.164 Water bridges: A:T.163 JBJ.4: 18 residues within 4Å: Chain B: V.35, A.52, I.53, K.54, L.56, E.67, I.68, E.71, M.75, C.84, R.85, L.86, L.97, M.99, D.164, F.165, L.167 Ligands: YY3.5 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.56, B:I.68, B:I.68, B:M.75, B:L.97, B:F.165, B:L.167 Hydrogen bonds: B:K.54, B:D.164

1 x YY3: N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-{[4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)prop-2-enamide(Covalent)

YY3.5: 18 residues within 4Å: Chain B: V.26, L.27, G.28, S.29, G.30, V.35, A.52, M.99, Q.100, L.101, M.102, P.103, G.105, C.106, D.109, L.153, D.164 Ligands: JBJ.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.35, B:A.52, B:L.153 Hydrogen bonds: B:M.102, B:M.102, B:C.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beyett, T.S. et al., Molecular basis for cooperative binding and synergy of ATP-site and allosteric EGFR inhibitors. Nat Commun (2022)

Release Date

2021-09-08

Peptides

Epidermal growth factor receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Epidermal growth factor receptor

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