SMTL ID : 7jxk.3 (2 other biounits)

EGFR kinase (T790M/V948R) in complex with PF-06747775 and JBJ-04-125-02

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x 8BS: N-[(3R,4R)-4-fluoro-1-{6-[(3-methoxy-1-methyl-1H-pyrazol-4-yl)amino]-9-methyl-9H-purin-2-yl}pyrrolidin-3-yl]propanamide(Covalent)

8BS.1: 17 residues within 4Å: Chain A: L.27, G.28, S.29, G.30, V.35, A.52, M.99, Q.100, L.101, M.102, P.103, G.105, C.106, D.109, R.150, L.153 Ligands: JBJ.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.102, A:M.102, A:G.105 8BS.3: 16 residues within 4Å: Chain B: L.27, G.28, S.29, V.35, A.52, M.99, Q.100, L.101, M.102, P.103, G.105, C.106, D.109, R.150, L.153 Ligands: JBJ.4 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:R.150 Hydrogen bonds: B:M.102, B:M.102

2 x JBJ: (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide(Non-covalent)

JBJ.2: 19 residues within 4Å: Chain A: F.32, A.52, I.53, K.54, L.56, T.60, E.67, I.68, M.75, C.84, R.85, L.86, L.97, I.98, M.99, D.164, F.165, L.167 Ligands: 8BS.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.32, A:L.56, A:I.68, A:I.68, A:M.75, A:L.97, A:L.167 Hydrogen bonds: A:D.164 pi-Stacking: A:F.165 JBJ.4: 22 residues within 4Å: Chain B: F.32, V.35, A.52, I.53, K.54, L.56, T.60, A.64, E.67, I.68, E.71, A.72, M.75, C.84, R.85, L.86, L.97, M.99, D.164, F.165, L.167 Ligands: 8BS.3 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:F.32, B:L.56, B:I.68, B:I.68, B:E.71, B:A.72, B:L.86, B:L.97, B:L.97, B:L.167 Hydrogen bonds: B:K.54, B:T.60, B:A.64, B:D.164 pi-Stacking: B:F.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beyett, T.S. et al., Molecular basis for cooperative binding and synergy of ATP-site and allosteric EGFR inhibitors. Nat Commun (2022)

Release Date

2021-09-08

Peptides

Epidermal growth factor receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Epidermal growth factor receptor

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