SMTL ID : 8gb4.3 (3 other biounits)

EGFR(T790M/V948R) kinase in complex with benzimidazole allosteric inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: R.150, N.151, D.164 Ligands: ANP.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.164, H2O.1

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 20 residues within 4Å: Chain A: L.27, G.28, S.29, G.30, G.33, V.35, A.52, K.54, M.99, Q.100, L.101, M.102, C.106, D.146, R.150, N.151, L.153, D.164 Ligands: MG.1, YW5.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:L.27, A:Q.100, A:M.102, A:C.106, A:D.146, A:D.146, A:R.150, A:N.151 Salt bridges: A:K.54

1 x YW5: 2-[(R)-(1H-benzimidazol-2-yl)(3-fluorophenyl)methyl]-6-[4-(1-methylpiperidin-4-yl)phenyl]-2,3-dihydro-1H-isoindol-1-one(Non-covalent)

YW5.3: 21 residues within 4Å: Chain A: V.35, A.52, I.53, K.54, L.56, T.60, A.64, I.68, E.71, M.75, C.84, R.85, L.86, L.97, I.98, M.99, T.163, D.164, F.165, L.167 Ligands: ANP.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.35, A:V.35, A:A.52, A:K.54, A:L.56, A:A.64, A:I.68, A:I.68, A:L.97, A:L.97, A:M.99, A:L.167 Hydrogen bonds: A:K.54 pi-Stacking: A:F.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beyett, T.S. et al., EGFR(T790M/V948R) kinase in complex with benzimidazole allosteric inhibitor. To be published

Release Date

2024-03-13

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Epidermal growth factor receptor

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