SMTL ID : 7jxp.1 (2 other biounits)

EGFR kinase (T790M/V948R) in complex with osimertinib and JBJ-04-125-02

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 21 residues within 4Å: Chain A: L.27, G.28, S.29, G.30, A.31, G.33, V.35, A.52, K.54, M.99, Q.100, L.101, M.102, C.106, D.146, R.150, N.151, L.153, D.164 Ligands: MG.2, JBJ.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:A.31, A:Q.100, A:M.102, A:C.106, A:D.146, A:D.146, A:R.150, A:N.151 Water bridges: A:L.27, A:K.54, A:K.54, A:G.105, A:D.109, A:D.109, A:D.109 Salt bridges: A:K.54 ANP.4: 22 residues within 4Å: Chain B: L.27, G.28, S.29, G.30, A.31, G.33, V.35, A.52, K.54, M.99, Q.100, L.101, M.102, C.106, D.109, D.146, R.150, N.151, L.153, D.164 Ligands: MG.5, JBJ.6 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:A.31, B:Q.100, B:M.102, B:C.106, B:D.146, B:D.146, B:R.150, B:N.151 Water bridges: B:G.30, B:G.30, B:G.105 Salt bridges: B:K.54

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.151, D.164 Ligands: ANP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.164, H2O.2 MG.5: 3 residues within 4Å: Chain B: N.151, D.164 Ligands: ANP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.164

2 x JBJ: (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{1-oxo-6-[4-(piperazin-1-yl)phenyl]-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide(Non-covalent)

JBJ.3: 20 residues within 4Å: Chain A: V.35, A.52, I.53, K.54, L.56, A.64, E.67, I.68, E.71, M.75, C.84, R.85, L.86, L.97, M.99, T.163, D.164, F.165, L.167 Ligands: ANP.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.56, A:I.68, A:I.68, A:I.68, A:M.75, A:L.97, A:L.167 Hydrogen bonds: A:K.54, A:D.164 pi-Stacking: A:F.165 JBJ.6: 19 residues within 4Å: Chain B: V.35, A.52, I.53, K.54, L.56, E.67, I.68, E.71, M.75, C.84, R.85, L.86, L.97, M.99, D.164, F.165, L.167, L.170 Ligands: ANP.4 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.56, B:I.68, B:I.68, B:I.68, B:M.75, B:L.97, B:L.167, B:L.170, B:L.170 Hydrogen bonds: B:K.54, B:D.164 pi-Stacking: B:F.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beyett, T.S. et al., Molecular basis for cooperative binding and synergy of ATP-site and allosteric EGFR inhibitors. Nat Commun (2022)

Release Date

2021-09-08

Peptides

Epidermal growth factor receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
F

Epidermal growth factor receptor

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