SMTL ID : 7lg8.3 (3 other biounits)

EGFR (T79M/V948R) in complex with naquotinib and an allosteric inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.93 Å

Oligo State

monomer

Ligands

1 x VNS: (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide(Non-covalent)

VNS.1: 18 residues within 4Å: Chain A: V.35, A.52, I.53, K.54, E.67, I.68, E.71, M.75, C.84, R.85, L.86, L.97, M.99, D.164, F.165, L.167, K.169 Ligands: 8RC.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.67, A:I.68, A:I.68, A:E.71, A:M.75, A:L.97, A:L.167, A:K.169 Hydrogen bonds: A:K.54, A:D.164, A:F.165 pi-Stacking: A:F.165

1 x 8RC: 6-ethyl-3-[[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]amino]-5-[(3R)-1-prop-2-enoylpyrrolidin-3-yl]oxy-pyrazin e-2-carboxamide(Covalent)

8RC.2: 19 residues within 4Å: Chain A: L.27, G.28, A.52, M.99, Q.100, L.101, M.102, P.103, F.104, G.105, C.106, D.109, E.113, R.150, L.153, T.163, D.164, M.311 Ligands: VNS.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.27, A:L.27 Hydrogen bonds: A:Q.100, A:M.102 Salt bridges: A:E.113, A:E.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beyett, T.S. et al., Molecular basis for cooperative binding and synergy of ATP-site and allosteric EGFR inhibitors. Nat Commun (2022)

Release Date

2022-02-23

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Epidermal growth factor receptor

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