SMTL ID : 8gb4.2 (3 other biounits)

EGFR(T790M/V948R) kinase in complex with benzimidazole allosteric inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.151, D.164 Ligands: ANP.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.164, H2O.1

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 21 residues within 4Å: Chain A: L.27, G.28, S.29, G.30, A.31, G.33, V.35, A.52, K.54, M.99, Q.100, L.101, M.102, C.106, D.146, R.150, N.151, L.153, D.164 Ligands: MG.1, YW5.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:A.31, A:Q.100, A:M.102, A:C.106, A:D.146, A:D.146, A:R.150, A:N.151 Water bridges: A:K.54, A:D.109 Salt bridges: A:K.54

1 x YW5: 2-[(R)-(1H-benzimidazol-2-yl)(3-fluorophenyl)methyl]-6-[4-(1-methylpiperidin-4-yl)phenyl]-2,3-dihydro-1H-isoindol-1-one(Non-covalent)

YW5.3: 21 residues within 4Å: Chain A: F.32, V.35, A.52, I.53, K.54, L.56, E.67, I.68, E.71, M.75, C.84, R.85, L.86, L.97, I.98, M.99, T.163, D.164, F.165, L.167 Ligands: ANP.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.32, A:V.35, A:A.52, A:K.54, A:L.56, A:E.67, A:I.68, A:I.68, A:L.97, A:L.97, A:L.97, A:M.99, A:F.165, A:L.167 Hydrogen bonds: A:K.54 Salt bridges: A:E.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beyett, T.S. et al., EGFR(T790M/V948R) kinase in complex with benzimidazole allosteric inhibitor. To be published

Release Date

2024-03-13

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Epidermal growth factor receptor

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